OBO Foundry dashboard analysis

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/usr/local/lib/python3.8/dist-packages/pandas/core/arrays/categorical.py:2630: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Removing unused categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax           171
unknown                    2
OWL/XML Syntax             2
RDF/XML                    2
OWL Functional Syntax      1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

	count	mean	std	min	25%	50%	75%	max
AnnotationAssertion	176	148973.808989	785499.363910	0.0	1395.00	7026.0	29057.00	9525482.0
Declaration	176	28067.073034	182560.563988	0.0	406.25	1165.5	4993.25	2334937.0
SubClassOf	171	38053.224719	206836.024057	0.0	323.25	1275.5	6475.75	2334908.0
EquivalentClasses	122	2654.960674	13538.205790	0.0	0.00	25.0	205.00	125954.0
TransitiveObjectProperty	117	6.393258	11.048039	0.0	0.00	2.0	6.00	69.0
SubAnnotationPropertyOf	112	8.185393	17.069959	0.0	0.00	2.0	7.00	119.0
SubObjectPropertyOf	106	40.146067	92.220695	0.0	0.00	2.0	44.75	650.0
DisjointClasses	93	28.404494	83.307642	0.0	0.00	1.0	21.00	603.0
ObjectPropertyDomain	84	14.769663	27.308817	0.0	0.00	0.0	18.00	141.0
ObjectPropertyRange	84	14.500000	26.758651	0.0	0.00	0.0	19.00	139.0
InverseObjectProperties	81	9.398876	17.659152	0.0	0.00	0.0	14.00	109.0
SubPropertyChainOf	68	9.342697	24.423303	0.0	0.00	0.0	2.00	142.0
ClassAssertion	61	73.275281	467.138044	0.0	0.00	0.0	17.75	5528.0
FunctionalObjectProperty	48	0.803371	1.690983	0.0	0.00	0.0	1.00	9.0
SymmetricObjectProperty	46	1.589888	8.400653	0.0	0.00	0.0	1.00	79.0
DataPropertyRange	42	1.033708	3.047457	0.0	0.00	0.0	0.00	30.0
IrrefexiveObjectProperty	36	0.612360	2.350926	0.0	0.00	0.0	0.00	26.0
DataPropertyDomain	36	0.960674	3.018516	0.0	0.00	0.0	0.00	32.0
DifferentIndividuals	33	0.657303	3.881068	0.0	0.00	0.0	0.00	51.0
AnnotationPropertyRangeOf	30	1.280899	9.868616	0.0	0.00	0.0	0.00	129.0
EquivalentObjectProperties	28	1.511236	5.545129	0.0	0.00	0.0	0.00	36.0
SubDataPropertyOf	26	0.629213	2.933855	0.0	0.00	0.0	0.00	33.0
FunctionalDataProperty	22	0.398876	1.285907	0.0	0.00	0.0	0.00	10.0
Rule	19	1.533708	5.254160	0.0	0.00	0.0	0.00	25.0
AsymmetricObjectProperty	18	0.410112	2.179854	0.0	0.00	0.0	0.00	26.0
InverseFunctionalObjectProperty	18	0.146067	0.476583	0.0	0.00	0.0	0.00	3.0
DisjointObjectProperties	17	0.235955	1.135184	0.0	0.00	0.0	0.00	10.0
ObjectPropertyAssertion	12	5.971910	56.709332	0.0	0.00	0.0	0.00	747.0
ReflexiveObjectProperty	11	0.112360	0.508420	0.0	0.00	0.0	0.00	4.0
AnnotationPropertyDomain	10	0.269663	1.631360	0.0	0.00	0.0	0.00	17.0
DisjointUnion	7	0.089888	0.565295	0.0	0.00	0.0	0.00	5.0
DataPropertyAssertion	5	0.550562	5.809618	0.0	0.00	0.0	0.00	75.0
DatatypeDefinition	2	0.112360	1.425658	0.0	0.00	0.0	0.00	19.0
SameIndividual	1	0.005618	0.074953	0.0	0.00	0.0	0.00	1.0

Breakdown of used OWL Class Expression constructs

	count	mean	std	min	25%	50%	75%	max
Class	175	116577.292135	610864.634774	0.0	1262.75	4841.0	19743.75	7004726.0
ObjectSomeValuesFrom	156	17660.988764	84662.234458	0.0	33.75	451.5	2677.75	788787.0
ObjectIntersectionOf	118	4403.500000	20418.478528	0.0	0.00	29.5	374.75	192615.0
ObjectUnionOf	86	28.398876	90.325609	0.0	0.00	0.0	17.75	767.0
ObjectAllValuesFrom	72	28.415730	149.182579	0.0	0.00	0.0	9.75	1764.0
ObjectComplementOf	64	7.960674	42.286000	0.0	0.00	0.0	2.00	528.0
ObjectMinCardinality	56	2.516854	8.534559	0.0	0.00	0.0	1.00	58.0
ObjectExactCardinality	44	9.050562	89.717150	0.0	0.00	0.0	0.00	1193.0
ObjectOneOf	43	3.769663	28.657687	0.0	0.00	0.0	0.00	273.0
DataMinCardinality	24	0.241573	0.691401	0.0	0.00	0.0	0.00	4.0
DataSomeValuesFrom	22	7.151685	65.348994	0.0	0.00	0.0	0.00	859.0
DataExactCardinality	21	0.511236	1.598865	0.0	0.00	0.0	0.00	7.0
ObjectMaxCardinality	21	1.168539	6.019246	0.0	0.00	0.0	0.00	49.0
ObjectHasValue	19	141.101124	1602.460693	0.0	0.00	0.0	0.00	21288.0
DataHasValue	17	123.005618	1595.465299	0.0	0.00	0.0	0.00	21288.0
ObjectHasSelf	16	0.241573	0.987528	0.0	0.00	0.0	0.00	6.0
DataAllValuesFrom	3	0.106742	1.044144	0.0	0.00	0.0	0.00	13.0
DataMaxCardinality	2	0.011236	0.105700	0.0	0.00	0.0	0.00	1.0

OBO Score (Experimental)

	ontology	score	score_dash	score_impact
118	omo	0.944	0.938	0.949
8	bfo	0.827	0.883	0.770
145	ro	0.794	0.863	0.725
129	pato	0.689	0.933	0.444
62	go	0.669	0.849	0.489
100	ncbitaxon	0.609	0.847	0.371
20	cl	0.605	0.929	0.281
108	obi	0.574	0.732	0.416
140	pr	0.556	0.876	0.236
33	doid	0.528	0.939	0.118
111	ogms	0.516	0.796	0.236
67	hp	0.502	0.885	0.118
168	wbls	0.500	0.989	0.011
14	chebi	0.500	0.579	0.421
42	envo	0.489	0.792	0.185
158	trans	0.488	0.948	0.028
161	uberon	0.484	0.620	0.348
125	opl	0.483	0.950	0.017
109	obib	0.483	0.949	0.017
11	caro	0.479	0.734	0.225
61	gno	0.477	0.949	0.006
49	fbdv	0.475	0.933	0.017
38	eco	0.474	0.943	0.006
57	gecko	0.470	0.940	0.000
34	dpo	0.469	0.937	0.000
31	ddpheno	0.469	0.937	0.000
134	phipo	0.469	0.937	0.000
174	zeco	0.468	0.935	0.000
56	fypo	0.468	0.936	0.000
71	iao	0.468	0.935	0.000
155	symp	0.464	0.888	0.039
64	hancestro	0.460	0.908	0.011
40	ecto	0.458	0.910	0.006
43	eupath	0.456	0.901	0.011
120	omrse	0.456	0.817	0.096
130	pco	0.452	0.796	0.107
169	wbphenotype	0.451	0.891	0.011
13	cdno	0.445	0.890	0.000
97	mro	0.445	0.889	0.000
74	ido	0.440	0.767	0.112
94	mp	0.439	0.844	0.034
9	bspo	0.434	0.789	0.079
137	po	0.433	0.770	0.096
73	ico	0.433	0.838	0.028
162	uo	0.432	0.696	0.169
147	rxno	0.427	0.848	0.006
136	planp	0.423	0.846	0.000
55	fovt	0.421	0.843	0.000
2	aism	0.421	0.842	0.000
141	psdo	0.421	0.843	0.000
166	vto	0.420	0.840	0.000
17	chmo	0.418	0.785	0.051
151	so	0.416	0.679	0.152
99	nbo	0.416	0.737	0.096
127	ornaseq	0.416	0.832	0.000
7	bco	0.415	0.825	0.006
144	rbo	0.415	0.831	0.000
173	xpo	0.410	0.815	0.006
82	mf	0.410	0.792	0.028
5	apollo_sv	0.408	0.720	0.096
177	zp	0.408	0.804	0.011
45	fao	0.406	0.795	0.017
36	duo	0.405	0.792	0.017
170	xao	0.405	0.792	0.017
44	exo	0.404	0.791	0.017
93	mop	0.403	0.789	0.017
39	ecocore	0.402	0.792	0.011
37	ecao	0.401	0.801	0.000
154	swo	0.400	0.793	0.006
92	mondo	0.399	0.770	0.028
124	oostt	0.398	0.785	0.011
171	xco	0.398	0.784	0.011
105	oarcs	0.397	0.793	0.000
96	mpio	0.397	0.788	0.006
26	cro	0.396	0.792	0.000
142	pso	0.396	0.792	0.000
23	clyh	0.395	0.789	0.000
153	stato	0.394	0.716	0.073
139	ppo	0.392	0.784	0.000
115	ohpi	0.392	0.783	0.000
163	upheno	0.391	0.742	0.039
60	geo	0.391	0.736	0.045
114	ohmi	0.390	0.774	0.006
135	plana	0.386	0.766	0.006
68	hsapdv	0.385	0.747	0.022
59	geno	0.382	0.752	0.011
107	obcs	0.382	0.741	0.022
133	peco	0.381	0.727	0.034
3	amphx	0.380	0.760	0.000
122	ons	0.378	0.733	0.022
80	maxo	0.377	0.743	0.011
167	wbbt	0.375	0.739	0.011
75	ino	0.374	0.731	0.017
35	dron	0.374	0.664	0.084
132	pdumdv	0.374	0.748	0.000
148	sbo	0.374	0.748	0.000
95	mpath	0.374	0.714	0.034
15	cheminf	0.374	0.749	0.000
123	ontoneo	0.374	0.748	0.000
52	fma	0.374	0.692	0.056
79	mamo	0.374	0.748	0.000
66	hom	0.374	0.748	0.000
19	cio	0.374	0.748	0.000
156	taxrank	0.374	0.738	0.011
84	mfoem	0.374	0.743	0.006
30	ddanat	0.374	0.742	0.006
16	chiro	0.374	0.748	0.000
76	kisao	0.374	0.748	0.000
121	one	0.373	0.746	0.000
165	vt	0.373	0.730	0.017
176	zfs	0.373	0.736	0.011
70	htn	0.373	0.746	0.000
32	dideo	0.372	0.733	0.011
85	mfomd	0.372	0.733	0.011
47	fbbt	0.371	0.720	0.022
150	sepio	0.370	0.735	0.006
0	aeo	0.370	0.741	0.000
50	fideo	0.370	0.740	0.000
126	opmi	0.370	0.713	0.028
28	cto	0.370	0.740	0.000
90	mmusdv	0.369	0.738	0.000
112	ogsf	0.369	0.739	0.000
116	olatdv	0.369	0.738	0.000
87	miapa	0.368	0.736	0.000
4	apo	0.368	0.737	0.000
81	mco	0.368	0.737	0.000
1	agro	0.367	0.728	0.006
89	mmo	0.367	0.728	0.006
41	emapa	0.367	0.735	0.000
138	poro	0.366	0.733	0.000
104	oae	0.365	0.647	0.084
113	ohd	0.365	0.731	0.000
157	to	0.365	0.724	0.006
27	cteno	0.364	0.729	0.000
128	ovae	0.364	0.729	0.000
106	oba	0.364	0.711	0.017
152	spd	0.364	0.729	0.000
83	mfmo	0.363	0.727	0.000
69	hso	0.362	0.724	0.000
12	cdao	0.359	0.713	0.006
24	cmo	0.357	0.675	0.039
29	cvdo	0.356	0.702	0.011
48	fbcv	0.356	0.696	0.017
21	clao	0.356	0.712	0.000
77	labo	0.356	0.713	0.000
86	mi	0.354	0.692	0.017
175	zfa	0.353	0.690	0.017
25	cob	0.353	0.689	0.017
102	ncro	0.351	0.692	0.011
119	omp	0.351	0.685	0.017
58	genepio	0.350	0.666	0.034
143	pw	0.350	0.695	0.006
103	nomen	0.348	0.697	0.000
101	ncit	0.346	0.581	0.112
78	ma	0.346	0.693	0.000
46	fbbi	0.344	0.688	0.000
160	txpo	0.344	0.689	0.000
159	tto	0.342	0.684	0.000
149	scdo	0.342	0.684	0.000
117	omit	0.341	0.664	0.017
65	hao	0.341	0.681	0.000
10	bto	0.337	0.645	0.028
98	ms	0.336	0.660	0.011
146	rs	0.335	0.669	0.000
131	pdro	0.334	0.645	0.022
88	micro	0.332	0.658	0.006
54	foodon	0.329	0.580	0.079
72	iceo	0.329	0.657	0.000
164	vo	0.324	0.570	0.079
63	gsso	0.323	0.640	0.006
6	aro	0.322	0.622	0.022
51	flopo	0.320	0.634	0.006
110	ogg	0.319	0.587	0.051
22	clo	0.316	0.576	0.056
18	cido	0.302	0.599	0.006
91	mod	0.298	0.586	0.011
53	fobi	0.000	0.000	0.000
172	xlmod	0.000	0.000	0.000

OBO Score Summary

	count	mean	std	min	25%	50%	75%	max
score	178.0	0.404011	0.095993	0.0	0.36425	0.3790	0.43075	0.944
score_dash	178.0	0.755893	0.121759	0.0	0.71225	0.7425	0.80325	0.989
score_impact	178.0	0.052180	0.132007	0.0	0.00000	0.0110	0.02800	0.949

OBO dependency graph